PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G232300.1
Common NameB456_005G232300, LOC105795187
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 276aa    MW: 29360.3 Da    PI: 8.0066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G232300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032106128123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k F++   L  H  +H
  Gorai.005G232300.1 106 YKCSVCNKAFPSYQALGGHKASH 128
                         9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.0E-14106130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-9106128No hitNo description
PROSITE profilePS5015710.325106133IPR007087Zinc finger, C2H2
SMARTSM003550.0057106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-9155182No hitNo description
PfamPF139126.0E-13159184IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432160182IPR007087Zinc finger, C2H2
SMARTSM003550.13160182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MALEALKSPT MATAPYSNKY EDIDNNYVDT WKKGKRSKRQ RDDGSSSSPP PPPPPTNEEE  60
YLALCLIMLA RGGSTTENAV TDGGNDDHRL SSSSSAPAPA ALKLSYKCSV CNKAFPSYQA  120
LGGHKASHRK SSTDAKPDNQ SITTSSTTAS GETGGNGKAH KCSICHKSFP TGQALGGHKR  180
CHYEGGNTTT TTTTNNNNNN NKSSSVSLSG VTVSDGGALS QTRCVDFDFD LNLPALCELE  240
IKDGSRFSQI YTEQEVESPL PTKKPRFMTA SLSQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0026320.0HM002632.1 Gossypium hirsutum C2H2 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480161.10.0PREDICTED: zinc finger protein ZAT10
TrEMBLA0A0D2SM800.0A0A0D2SM80_G
STRINGVIT_03s0091g00690.t013e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-45salt tolerance zinc finger
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]